miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|166887377|gb|FD721234.1|FD721234 CGGGATCAGCTGAGAGTCATGGCAGCTCAGGCGTTCAAGCGATTCCTGCCCATGTTTGACCGGGTCCTGGTGGAGCGCTT
GGCCGCGGAGACCAAGACCAAGGGGGGCATCATGATCCCGGATAAGGCCCAGAACAAGGTGGTGCAGGCCACCGTGGTGG
CGGTGGGACCCGGCGCCATGACGGAAAAGGGGCACGTGAAGCCCTTGAGCGTGAAGGTCGGGGAGACGGTCCTGCTGCCC
GAGTACGGCGGCACCAAGGTCACGCTGGAAGACAAGGAATACTTCTTGTTCCGAGACGGTGACATTCTTGGAAAGTATCA
GGAGTAGGCCGGCAGGCAGGCGGGCGGGGGTGGCGGGGCTGGGGAACAAAGCGAGAGCTGGAAGGACGAGGGGGTTGTGC
AGCCCACACGCTCCGTTTATTCCGCGCGAAAACTTGTCTCACGATTCCGTCTGTGTGCTGACAGAGGGGGGAGGGTAGCG
GGAGGGTAGAGGGGGGTGGATGGAATGGGGGCGGTGAGGAGGGAGGGTGTGTGCCAGTGCCGCTGGATACTCCGTGACCT
TGAGTGCCGCGTGCTGCTCTGGAACGTTCCGCACGCCGGGGACCAGGAGGGGGCGCCAGCAACACGCTGACTGTGCTTTT
CCAGAAAATAATAAAATGTGAAAAAAGTGCANAAAAAANAAA




Most similar to sp|Q9W6X3|CH10_ORYLA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9W6X3|CH10_ORYLA 10 kDa heat shock protein, mitochondrial
           OS=Oryzias latipes GN=hspe1 PE=3 SV=1
          Length = 99

 Score =  159 bits (401), Expect = 2e-38
 Identities = 75/96 (78%), Positives = 88/96 (91%)
 Frame = +1

Query: 31  AFKRFLPMFDRVLVERLAAETKTKGGIMIPDKAQNKVVQATVVAVGPGAMTEKGHVKPLS 210
           AF++FLP+FDRVLVERL AET TKGGIM+P+K+Q KV+QATVVAVGPG+M +KG V+P+S
Sbjct: 2   AFRKFLPLFDRVLVERLMAETVTKGGIMLPEKSQGKVLQATVVAVGPGSMNQKGEVQPMS 61

Query: 211 VKVGETVLLPEYGGTKVTLEDKEYFLFRDGDILGKY 318
           VKVGE VLLP+YGGTKV LEDK+YFLFRD DILGKY
Sbjct: 62  VKVGEKVLLPQYGGTKVVLEDKDYFLFRDADILGKY 97